Scaffold Ga0181344_1000798

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1000798
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12144
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (38.46%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F028148	Metagenome	192	Y
F030733	Metagenome / Metatranscriptome	184	N
F086598	Metagenome / Metatranscriptome	110	N
F086618	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100079811	F001964	AGGAGG	MSRNLFAPPRFKVQVSGAIGWSDLKERVISYRTLEYPTRKEAEATARELNPGEYTQGRIRVVPVEVPEDYDVYPTPERTKP
Ga0181344_100079814	F002227	N/A	MKLTIQSKQNAQTIIDLFNAIITGECEEHQATPMSIYDDDKHICSIVAANGEQILELIIEREAGDKLIQTCEPEDAP
Ga0181344_100079818	F028148	N/A	MKTIHQIIREIQFFDPAIRAFDAHDLPQSVRAYLHHNYRMDARLDDEEQQLVETSFEPFADNLREAFQDDPRPDATRFYLFDDLSLYVKTNAGPELWADAQVFVVERILPQMRLTRMEADLMREIGMDEQVSEVRDDFFSSFAHVLHRDCGIPYSDAREHWNAWSNQLSDSACESIVLGGSESGRAEGLRFASEYTVKA
Ga0181344_100079819	F086618	N/A	MASIQRIENAVNNLINGNLSDARRSARGLSYSEVFNWLTYSVGWSEKRSRACADYLIGRIDYRTYCNADR
Ga0181344_100079824	F000922	AGG	MTSEQWTKAKSLYLAGKTWKAISSDLGLNQSTLLSKASREGLPKVRKEMRNTVSSKETVSLESLSVLVRSKLAADAASTLERIEGYSLDGIKDESTREQILGSVAKRSALVFGWSEQGEAASVSINLLGSMPDKFHVEQVVSEPPDK
Ga0181344_100079826	F030733	N/A	MTLRIGSGWIISHRVVDGWPTTTQITSVYIFHLMSCPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGENGGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRTWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPIFPLYIGLEASQRIAQNNPAFREDLRQADMGSGSGAELLKRIGAN
Ga0181344_10007988	F086598	N/A	METEKSSVLKDQLEKAATMFKRISESVDRIEKTLKEHERKIDEALQRSSCQDDTDIDTWEGFGPKPERQPFNPNAETYTLELHHGPYTIRRDDGESDKEWQRRKDHLMDQRVTFLNGSGVNGTPEQVAYLQRIEERLGRKIFKYPLATT