Scaffold Ga0181344_1000554

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1000554
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14671
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006988	Metagenome	360	Y
F024977	Metagenome	203	Y
F037735	Metagenome	167	N
F105190	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100055415	F006988	AGGA	MTSRPYTGNKDAVHAAKREGTKTFVDYCCYLFGVTNIGIFNDRNMVGTTPPKKSVHATWRAVDLKGTPEQRLKLIDFLYTHRDILCIEEIHDYAGTYKNNPKGWGAGYRCDRDAWKVYDKNTIGSKGAQWVHVELAPLLADHPDVVHHAFKTIMGA
Ga0181344_100055419	F105190	AGGTGG	MICGLCKKELHAFDIRVQDLLQGICLACGKAGDWQHMTPEESSRCQQLFTWANMTADQRKAYDRNRGS
Ga0181344_100055423	F024977	AGGA	VTEFMQPINPMRVITGNEEWSFTTPVFAIAISNSHDVEYLTINGQFFTPLTIKFAEMLINGQWQRLEGRHTPPT
Ga0181344_10005545	F037735	N/A	MTVYTDLFNKSIDDLATTLATITGMRVVFDPEKINPPCVFIDAPSFDCFNYNIVTMNFSVKVVTLGPGNLDGLRNVLDMCAKVLAKNVAVKSGRPGYIPIGGQTFAAYDLSIDVQAQAG