Scaffold Ga0181344_1000399

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1000399
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17538
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012199	Metagenome	282	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_10003991	F012199	AGGAG	MSSYTPLRTPFINMSFCPDVPSNALTSNEYNSGRNVEADVRGIKKIGGEEEILSTITDMPIFMEGFFRSESQWVYIVATRNSSSQGKWFMITSGGITNITPGVGGNPSVFLPNYTEDINITTSSVGSVFFINDGISNPMYFLPTANEITVTPDANWNYDVGVTSTRAGFVRNFCSPNVGNILIAGNLTKVIGGTSYNYPTTVRWSQAFANTGVPATWEPTLNNVANEQEIPVRGPIIDGFFLGANFYVCSYWDTVVFSPIAYQNTTAPIFGIRLFNQGRGLINNNCWSNTDSMVYGVDSRDIWVFNGSDFAPLGNQKVRDYFFANLSTTYSDRIFMVNNTQKNQIELYYPDLTSTGWCNKMLSWRYDLNIWNAPKDIANACMATEGPIFTGGAFKYASRTVAYARGGASNTKLVQTNRGNSFINSAPIP
Ga0181344_100039911	F000857	AGGAG	MELNLNNEEAKVNEDYYLKGNLEGGIEGALIKNDKMFNEVKSGTWSQTFKTKNIDYKVGALDGARYVQYEQKNVEAIREECKNRREFYKEHGTDNPFFAGTFHAMELPKCFAHEISSKWFNNRPWELIKQDKKDKILFYAIVNEYYSDFVCHPSGKIPLPFNPAIPTK
Ga0181344_100039915	F004695	AGGA	MLDKQNIVVESLESPPGNKGIEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIAVSNSTEPVRGIDYISPVVTPGIDYSTAVITKCLMPNGKLNFEFERFSESDADGAQQAAKMALHFINSKNDSYAVIRDWAQDALLHKNGVVMIKPVRDKITQYKEVEGTKDQLRSFEIMAAEKGLVTKRQQMRRIDVDLQGVAQETMMPDETGMPTEPTGEEVQDAIRNNTVYRAKYKMTGYSTNIQIKHVAQHYFVCNPTIPGIRNQDFCGFYDPMTIHEAKTQYPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVVMITTAWLRKDVDNDGEEETIEICYSGSYILYVKEVDFIPLAVIVPKPIVGNHFGYSQAERLVPLQEYKTAINRAEIAFAMRASTAQIGVNPEFVDAEEIQRGVSAMFILDRKFDPTKHVYEFQPMQGNLAYVQDAMERFDADTSRMLGMTNPADTLNPEVMKDGNSGYKLQLAMGPNQIIQDEMVKNCAIGVRDMIYIVWKTMIQYADDYNIQQLADAMLPGAGFLDAKSMENFEFIDRNMINVDLALGFLSDENRLTRQQLIMQAQQGFAAIIGQLDPSVPEMFIKARRPFEDTLYALGVKHCDAYLPTLEEAAKMMQAKQAQGPGIAEQEVQSKVELNKAKTQESQTVSALNMKKAEDIDMDNFFEGEALKAGKLTAVQVD
Ga0181344_100039917	F006264	N/A	MEDFSAIFRQRLSGQAEVCARKSLEWLQKDLQSEQKLQPDEIYYLAQAASILLNIRDTYGKK
Ga0181344_100039918	F001059	AGGA	MATYDIEALKADLPTAKELAQFVYDRTQMSLDLIGKTKEDQYLVAKNALEGKKVPAEYLTDENPYVDRKEQIPVDEVRKLPERNKDLPPPEALVHFFGATNMPHPLDPQSDKKVGINFKKYNNGLITYQVMGPLEQIAVGTKINKYGQEVPERFSWIDPRTEELIMRNPDGTYTQRGQGLYTYLIGEKGGGIWGLIDKDMVRATAKNIADPWA