 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017754 Open in IMG/M |
| Scaffold ID | Ga0181344_1000267 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 21221 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (26.09%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.2382 | Long. (o) | -86.2805 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002045 | Metagenome / Metatranscriptome | 599 | Y |
| F032658 | Metagenome / Metatranscriptome | 179 | Y |
| F049638 | Metagenome | 146 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181344_100026712 | F032658 | N/A | MKNIKQFNKFDLIKEEASPRLPVDEKYWLKKGKDGKKVALYTHDDMDGIFSAIEVKKYLLNKGFTIEKYGILNYTEGWKYTTLDPKLINVVLDFASMPGDERDELVDYYLDHHGLFSAEELERYKSSPVQKKKTASAYEAICQALGVPQDSLTLDVIDMIDAAKYDQYEVSWQRLLDFDLSEIKKSKNKRLEFGAAFNQFIKRSDSKTIISVIENCPDASIYSIFNTMKKVYPEHNVIMGGARRGQKKDFIEDSEWRLGEMQKKTRGSMTKKITYNTQGEFTSQFRNGQYLQIDGYQKIGNLVYVPTGTWANALRARTIVEKDFQDGILDSEPNFILLQYGGTLQVCSYKNMDKIENLPVLRNGEVVTDLGKYMTELLQNFQKHLGYHNPDTSLGQDEITVSGGHGGIGSISNVYGKCELPAYLDLKYVDMFKNKIISDLSGVPFNLGLKWSEPAEPFHPKEPAMDNKVIAAKDVTKLDKQGNLIKNFESFTKK |
| Ga0181344_10002677 | F002045 | N/A | MEFFCVYCRTRKKFDKFVKVNAIKNKYIIDINKIISEEEVDFTEDKTYLKILIFNKIQQAIDKKKDIYYIPDFDNEFSIEKLLNLKKILGENNFNVLIFYNEFRRNPEVIDDVFSNLSKFSNSQIIRDY |
| Ga0181344_10002678 | F049638 | N/A | MKAKEILKKYKITRNTLCNWVKKGLIEVEKTPSGRYIYIDKTKKSDE |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |