Scaffold Ga0181344_1000118

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1000118
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32451
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016810	Metagenome	244	Y
F039487	Metagenome	163	Y
F042338	Metagenome	158	Y
F100353	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100011814	F039487	GAG	MLILNKGQQNELVLNINNNSRQDFSGYTLTFVHTLSQEEKTYTINTSNPAEYGENDRYCEIILNLQYPNNDLNYEGQYQLQIFGNGTNLVYTGLCRLDGTSEKGNDYISYVSPDEDNNNYIYIQD
Ga0181344_100011817	F016810	N/A	VRNAKLGSKTKTNTEMSTELLLIISNMLTGIAGWFVGRKRQQADTDNQVLRNLELSVNIYVKIIEDLKKEIHELNNKVNDLEKMVEKLMEENRRLKKTKL
Ga0181344_10001183	F100353	AGAAGG	MNFGYPIQYANGLNSNSQIRRSTDMVYQRGGEYQVVLTGDTYIQSMELNVDLYSDDRKVGRMSIIPFDVSETGSTFTYKFNIRPYDYMSNYVKSEHYTNYYLNDWYSTNQLINFNNPYPNSIKVNFKYGYKFIQNLTNFYEPLTGNTPTRIDTPVKNDFNHYTDVPFCATSTGFTASGFTNTGKYFDYVGGSFQMGRDKYYLPNFDQELGSVIGTGFTINTLDVNRSLSPMSQYLMDYPTLPEMSETGRFLTDAPRIQTIQEQENYVLYFLNGQTGDRQVIEADFAVFEFYDENDNQITYFEQQVNFSGTTYQSPTGYTDTLRIFSLPCGPKDITNIFATVNWDNVAYYRVQLFYAHPTNSVNRVGLGPIGPVSEIFYFYLYDNCKPEDTRLVFLNERGGYDYYTFTSYRQDTKKITRQTYDNRYYSTSQQSPDRNLGRTIKTFDTNVEREFVLESDWLNVSYGNWLEQLFMSPQVYEMKEDFISPLDRQDYIYKDLRPIQVLSTEVQTITKQHQKLNKYRITCKYADGYFVSKGF
Ga0181344_100011841	F042338	N/A	MTNYKQIIQDLSGMAYYHPQINSFGFGDITQITMDIDTKKEPVYTKMYVVPGNVRLDENRLLYDFSIIILDRINEDYSNQRDVMSDTLEVAKDIFTIIYQSYTPQYGDFSLFYTPEWGPNVTPFLERFETILGGWTLNITLEQPFNYDTCVLPIQEGFSLPDSVNLVNYKQIIEDLEDFANNHEQINSYGYGDLTQLTMNIETEQEPRYTRMYVIPGDVVLAQNELVTNFQILIVDRLNNDYSNQRDVLSDTLEITKDIMTTLYLSEYESVWPSSVEPILEEYETILCGWVMNIQLTQPFDYNRCVLPERPFTQGKKWFELAELWNEISKSWNNV