Scaffold Ga0181344_1000113

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1000113
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33324
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (8.93%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044325	Metagenome	154	Y
F049410	Metagenome	146	N
F062749	Metagenome	130	Y
F068425	Metagenome	124	Y
F071219	Metagenome	122	N
F082106	Metagenome	113	N
F100403	Metagenome	102	N
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100011313	F071219	N/A	MIHSHHPDNSILVIITSVIIQAGVWTSDWFGNMNLTGIYDTIYDLAKLGALVVSMWASYRVAKKNKNE
Ga0181344_100011315	F068425	N/A	MSIHQKRLLIGLINGINNNNMKTHHQIITFAVLCLLLIIGLNHCAKEKPKPIPFDYKTEAEMIKKQFGIEQAILLNQLESVNRRLQVANNAKDSIRQCEISLTNTNIALLKKLRTTLPKDCDTVFVLCDEIINVKDSSYAALFNAFQLCADGSTIKDSLIVAYKAENVTDSTLLSISKQETKQQRRGKIAAWCVGGAMFILWLVVGLK
Ga0181344_100011319	F049410	GGA	MTRNTRYTNGKEIITFVKIDFIVIGGRKIDHVYFRRKDKHDLIMPLVEWNLKGKFEWEII
Ga0181344_100011324	F062749	N/A	MKTKASLILWAVSALFMSFWAVSFAMTGAENGNSDHLTFTLSFCASLTSAVCGAGFMQQWLKK
Ga0181344_100011325	F102493	N/A	METTLTLHWDYEETDRESGIRGGWVLTDITNGDKPIHLSPKLEQLLNEELNPDNF
Ga0181344_100011327	F044325	N/A	MKALIQKLLFGYRNNPEAYIPKGGAKLTYKGGNAEAIHSALVLMQYNIRNAKN
Ga0181344_100011342	F082106	N/A	MKIYTIPEFELYYHEWKRTQMQPRFHDTLPIERFNLNKKKVVKKRKAELTTNHLDLPVNNVIQPKETKDAFNTNKFTDLIIAYLKAVHSCNSARRISSEGRYRKGIGYIAGLNKGMEDIQCILKGRLFAIEVKSPTDKISPEQLKRKAAIEADGGYYIIATSFEQMQTELINLLK
Ga0181344_10001137	F100403	N/A	MDITSNIPFVIGNILAKFRELGNPETVSRAAAIAVLPELRYRIHVDGKNSSGGAIGTYSNSYLKIRERENRGTSTKVIISLTRQLENGYTLKATEKGYTIGNTSPANEEIIGHLTEKYGDIWQLTERELEMTQIVAQETALLIMNK