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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017754 Open in IMG/M |
| Scaffold ID | Ga0181344_1000108 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 34041 |
| Total Scaffold Genes | 55 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 51 (92.73%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.2382 | Long. (o) | -86.2805 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025009 | Metagenome | 203 | Y |
| F039983 | Metagenome | 162 | Y |
| F042304 | Metagenome / Metatranscriptome | 158 | Y |
| F047492 | Metagenome | 149 | Y |
| F051929 | Metagenome / Metatranscriptome | 143 | Y |
| F059902 | Metagenome | 133 | Y |
| F088417 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181344_100010814 | F088417 | GGAG | MAERIYLVTGTQEGARLVKASLRQQALAHVASTEFNIRVATQDDLVNQIRAGTEVEQYRSPDQTELSLSEE |
| Ga0181344_100010816 | F051929 | AGGA | MTEQRYLAGGQEFFYPHAGDPKAPENTKLLLLTTGGICTTGTWNHNWCLGWLPLPKRNMEKEDKK |
| Ga0181344_100010827 | F042304 | GGAG | MTKLLNTYRAAPTAANRAKLQNYIAKHMMAVCMASPDEVAFLKANQFSI |
| Ga0181344_100010836 | F025009 | GAGG | MSTALKVKWFTGAKGSVGIAKVQTDDGKIEYRLSPVDGFLEHMDVLQVVAWGDRFPVEAGDVLFGAEK |
| Ga0181344_100010838 | F047492 | AGGAG | MSFDKNIFSQGQTLFTQDEFNKALGEAKAEIMAVAIQTTRQAMYLERRACAQMLLDMADADDEGTVCTALRNAAEEMMNRVPAQRQ |
| Ga0181344_100010851 | F039983 | GGA | MKSHLNEELVKQVFFYSDEKRPDPLIADEVDIVQFAEKLEAVLRPLIAAEEHKRCVTIVAHMNREVANALAGQRP |
| Ga0181344_10001089 | F059902 | GGAG | MDKYDQAIEFLKDVDPGSYYDECAELMEELVAKVESAKPKRQRFSAEDQAWLKQAGGGARYYAKARGLL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |