Scaffold Ga0181344_1000100

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1000100
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35125
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (80.56%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012328	Metagenome / Metatranscriptome	281	Y
F015856	Metagenome / Metatranscriptome	251	Y
F026827	Metagenome / Metatranscriptome	196	Y
F030356	Metagenome	185	Y
F066604	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100010013	F066604	AGGA	MEKNTTEKKKGRGGPRPGSGRKKGSTEQVTIDGLLSALKDKSGGKPYETLLVEDFLQARTRGDSQLTVKYHNLILNKVMTSLAKIEITEPQDAIEAKQAAFAEALAKLTGLKKD
Ga0181344_10001003	F015856	AGGA	MISEDSVEFYNTRLTLDYSNLHKMTPAKKDQIRHYGSQAEQLLKNKDLAMFIHHHKFELADTLASIRGFTNDDNSQRVALAHELAGIDNFVNSLKKAVYLKTKLGNDNIAQV
Ga0181344_10001004	F030356	AGGA	MLDIKNIPVDDINQNRKINERFVRMKNLMDVKMASYLRYLGTKNAVNRASDYHYLCLAVTDSTAPVNGIDYIHPSVKPVVDYATAVIAKGLMPNGEINFEFVADGEMDETAARQATEMVSKVVNQMNDPHFILERWIMDSAMHKNGMMMIKPVREKITRYVETEGTLEQLKAFEAQAAEGGLTALRQSRRRVKVEIEKVWKEMQGSTKEFNQGLAQEMVGGFVDQLGTTNPDDMDGLMESNTAGLETQQLDGEQQMLNDSISRNSIYSAKYKLTGYGINIKFHPIAQHYWICDPTVPEMKDQPFCGYYDPMTIQEAMELYPDINLEEFRTHAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSASSADPDSKQVSVVTVWNKYDIDGDGELELVELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPMQEYNTSAARAEIQLGLLTATPRLGVKPDRLDFEMLQDGEAAIFILDSKFNPATDVYQVPPPSGNLQFLEVAMNRIQQDTMAMVGMTSPTDVFNPEVMAAGNSGVKLQLALTPNQIIQDNTVRNSAEGLREALWLVWRTLIQYGDDYGVKKLAQTTHPDKKPEFLDFKAWDDMNFCDRKQIHLELALGMNSEENALGRLQIIQKCQADLYTTTQSMVTSGTLTPDIYKKIKKPFADTLYVLGVKDCNSYLPSDDEVMAMIKQANESMKNKEPSPTDKKDLSTAMLNQVKANQIQMEVSGQDAETQLDYMALAQGDPKVYS
Ga0181344_10001008	F012328	N/A	MTKKKITPSEDIWDTTTDVKEAVVESIKQEIPDISKVKKPQAPKATSNVQFDLEGLMTDFPTAKELERFVYDETGIVLNLKGRANKLKYQVAMDVLNGEDIDPVFLGTDNPYIDRTELVPIDPIKEVPKRDESLPDRNQVQNVFFSPVIPHPDAEQRAQDKKVHMLFRKYKNGMISYDILGPLEQKPFGEKIDKFGRTRPEVIKWVDPRTGEQVVMREDGTLTPQGKRLRATMQTFRVNNTNQWEVWIDREFVSLNDTVANNPWDLDK
Ga0181344_10001009	F026827	AGGA	MSNPQSKPINQKRGPTTGNSGTPSKRSEFMAEKSKSSSEKATLANMVTSALEMRGRGQAGKTNPALEGLHERTGPKRNPTASKK