Scaffold Ga0181344_1000087

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1000087
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37791
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (86.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000961	Metagenome / Metatranscriptome	820	Y
F015839	Metagenome / Metatranscriptome	251	Y
F022398	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100008712	F015839	AGGA	MTNTVYTAYVASDLFNAGYGCDGHPFIADQYYVVIENAAGRRFRHVATFNGTEQVICEETGDACFPDLRKEASAKAERLAARVNAAFAAGKDVDWTYWGEVDPAYGSDEFISQGTEAQRAFAEKATA
Ga0181344_100008726	F022398	GAGG	VTPLNSGTLIARAWEALHEFGKITAQEFADYADIGRYDAHAALSKMNKRTKAGVKRIYVADWTYGHDDARRYPRAVFMIGDQPDKPRPKPDIAANRRRHEQSKNRMHRMNSVFNMAMTRDKIRELRRTL
Ga0181344_100008732	F000961	GGA	MAEIDPVKYGVLWERVQNYERRFDEMSSKMDKLEANVEKLVAMANQGRGGFWAGMAFVSFISSAVGFAASWIKGH