Scaffold Ga0181407_1055800

Overview

Basic Information

• Taxon OID: 3300017753
• Scaffold ID: Ga0181407_1055800
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1028
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016757	Metagenome / Metatranscriptome	245	Y
F029289	Metagenome / Metatranscriptome	189	N
F056143	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181407_10558001	F016757	N/A	MNLMGMERGMTERTWEVKVEATTTREVIVHADTEYEAQIQAQIEMVGLVGGENTKVLSVKETTDD
Ga0181407_10558003	F056143	AGG	LKQQDASHSILVGLVEVMGESMSKVSDWSIQLEDDFWDTANKVVGGCEYFEQFVKEMEPFRDWLGTHNDQEYCERLWDAWDNYWRDKR
Ga0181407_10558004	F029289	GGAG	MTSAITPRYPNAASDPRLTNTADKWRTLNRQIHDKEWNGEPVTNAERDKLATLKRD