Scaffold Ga0181407_1012084

Overview

Basic Information

• Taxon OID: 3300017753
• Scaffold ID: Ga0181407_1012084
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2447
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F001416	Metagenome / Metatranscriptome	699	Y
F003678	Metagenome / Metatranscriptome	474	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181407_10120841	F000613	N/A	EKRLSIAAGATSDQVLSGTTYEYVDPGTRIVVAAAVDTVGTATADTTMDFNVNNAEFSKNASVSALVTGEPFGWNGNYAMNDMVTTGQVRNRPVITFTNGTAATRTVDVAVFIGG
Ga0181407_10120843	F003678	GGA	MLYAPLIIASIALFLCLYACVRVGQFINASKGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMMQLMQRQPNQQMNGNIKNVGG
Ga0181407_10120845	F001416	AGGAG	MPLVKKRLSIAAGATSDQVLSGTTYEYVDPGTRIVVAAAVDTVGTATADTTMDFNVNNAEFSKNAS