Scaffold Ga0181407_1005485

Overview

Basic Information

• Taxon OID: 3300017753
• Scaffold ID: Ga0181407_1005485
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3763
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: unclassified Hyphomonas → Hyphomonas sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004990	Metagenome	416	Y
F011253	Metagenome	293	Y
F035491	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181407_10054851	F035491	N/A	TKPTWELRAIIKALTLPVSSFLNTDEDNERLEQAQIVLYERRLKNSQPIKMEVK
Ga0181407_100548511	F011253	N/A	LENKVLAEGVPKLKDRSIDIQNIIKKMVKSKSFPYSNAVNKIKKDRKGYYQQKDIKNKQKSLSSDRFQQYLKDIQENDTD
Ga0181407_100548513	F004990	GGA	MYGDPKKKCCSCENGADLKEGNRYFCCDHYAINILGKTMEQIEKELKGYELDI