NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181400_1123185

Scaffold Ga0181400_1123185


Overview

Basic Information
Taxon OID3300017752 Open in IMG/M
Scaffold IDGa0181400_1123185 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)748
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023845Metagenome208Y
F041145Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0181400_11231852F041145GAGGLSKPANIKHDNLVTKLEMLVKLCEETEPTPKQLLKMSGEKNADVTDLFTPELVDAKFYLQEVKEQEYDNYSVVDIMRACNIMWRWRLKVKKDGWPDMSNIEYRCGELIRDSKKITAIKEYRAYMGNRDKEVSLRQAKDWVDRLSIKMDLDS
Ga0181400_11231853F023845N/AIEKLIENHVKECRRNIPWSGEHRMVVDKIINIFKRTH

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