Scaffold Ga0181400_1009543

Overview

Basic Information

• Taxon OID: 3300017752
• Scaffold ID: Ga0181400_1009543
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3401
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009110	Metagenome	323	N
F022198	Metagenome	215	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181400_100954310	F022198	AGGA	MRTIQQYRKDHPQLSEEQVHSAYHVTEICYPEFAVSGFTLIARGKCLAIHENGNIAPLRLKESYGESVY
Ga0181400_10095439	F009110	GGA	MIASAVRYMESIKDKVPPAGEDDIIVKPGTTHMRTLGIDPHEAVKAVDKLKATGLMVKDACEQVGMTRSQYYKTKKGTTNRK