Scaffold Ga0181400_1005607

Overview

Basic Information

• Taxon OID: 3300017752
• Scaffold ID: Ga0181400_1005607
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4615
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004603	Metagenome	431	Y
F015990	Metagenome	250	N
F027830	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181400_10056073	F015990	AGGA	MGKGSGRRIEDINKIRDNWDSIFKKRDKKQITKVIIEFEMPGYPSIDQINNHVEKLLKEDKITGLTITKNA
Ga0181400_10056074	F027830	AGGAG	MNKITFNIAFGKYSAYFRDREFGTKLADISETYSKATGEGGYLLRDENDMHIAYITKEGKVEA
Ga0181400_10056076	F004603	AGGA	MIFSININGLIIDWCYNLDCQDKQYHKTWIPKLRDIQIITKDLNGLTVSEVKKIILEDIQPDITMVKEHNNKLARARRMGI