Scaffold Ga0181400_1000215

Overview

Basic Information

• Taxon OID: 3300017752
• Scaffold ID: Ga0181400_1000215
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24260
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014724	Metagenome / Metatranscriptome	260	Y
F045676	Metagenome / Metatranscriptome	152	Y
F055643	Metagenome / Metatranscriptome	138	N
F067627	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181400_100021513	F014724	AGGAG	MKEELYSIKTAIDGLSDEMLEHRRHANMEDLVKVMKNINDSLVSISYDLKELVEAKKFQNELTTALR
Ga0181400_100021520	F055643	N/A	MTTKELIELINSTQDGEIWLYDSKLKDHLATVEQALEEDLIHFIRADVGNSTTEFIRVSI
Ga0181400_100021531	F045676	N/A	MSEREPYPELDCALAMSKARGNLEFLLSRTKEEWRETFTTAQAIEDAFFALVEAEEEYDKVLTLLRESNKLNT
Ga0181400_10002157	F067627	N/A	MINTLLKVLSKQQFGFVTKEDLDSLEIEMPNLPLLIRCGCDRYIAQAQDTKARMDYVEETGDYVRDVSIPARTLDGMSTSPFVPFAVKQAIESMRAF