Scaffold Ga0187219_1156388

Overview

Basic Information

• Taxon OID: 3300017751
• Scaffold ID: Ga0187219_1156388
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 654
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010573	Metagenome	302	Y
F011339	Metagenome	292	Y
F016059	Metagenome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187219_11563881	F010573	N/A	RGGRVSGLVQDWDCTQCKEGKGFQETFKDTEEGYILECLNCKYMEVYREDVDTGKVVEDYAGYEHYYNNEQARG
Ga0187219_11563882	F011339	GAGG	MAKHKITDWTITAVVERPDGTWYDHTITDFPEHIGITINEWLQDYKTTEEESNEE
Ga0187219_11563883	F016059	GAGG	MKNKKYKVTASQTIYATYEIEVEADNEKQAEEKALNTYINDWDDERFENGDALTVDEIEEIE