Scaffold Ga0181405_1000870

Overview

Basic Information

• Taxon OID: 3300017750
• Scaffold ID: Ga0181405_1000870
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10157
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F002221	Metagenome	581	Y
F018081	Metagenome	237	Y
F038657	Metagenome / Metatranscriptome	165	N
F063662	Metagenome	129	N
F093807	Metagenome	106	N
F094536	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181405_100087011	F038657	AGGAG	MDVLGGMSNTENKQQIYLGFKTRDQKFFANGETEVPIEYLQLDTDTFKSGWGRYTKAEGFQYKWDSKFGVVNPKPADEWRRAFSAWVMPSGAEHAYLWQSFSFAESSAFNNICGLFWADKANNVGKLPVVEYKGSKHIQVGAGNSSELSFGFVKWGDRGFYVPEWYIDPDAPADDDDGFVSPNEGLADKVAEMVAKTELSDSDIPF
Ga0181405_100087013	F002221	N/A	MFGEIMKTYIDESLEGKLKQLREYERETYEKWGARKRIFKIVGVEFEIKFCKAEMLLRDTLYNGHARKKVQMVDMMFRALDSLNIKCEESGYIMIQPSSKCFNFDKKTAIICDTDDEKPVLIKIHKNEPDMMIFSIEELLRCIPKDFMEAKQILSRLDKSVNFKRIDHD
Ga0181405_100087017	F094536	AGG	MRITVQDNLKEIRKQLDKDLNKKDFNKIMARAMNHTGERVVNAERSHLNDKLSNPRPQTVKSVVISQFAKPKNNKLAMTVRVKDFAAKYLHYIYSGENELARRQKYASPTDNLSKKGKFGNIMKLSKKGGLLGKVDRTKDSQRKGSRFQGIPKGEGSNYYGIWERQGKKGREGLKLLVAYTPFIKHRKFIDFFKVGEKVIKNTLHREIDKQFARHMKRKGR
Ga0181405_100087018	F018081	AGGAG	MKHFKEREFSLLNYMCDILYDFYERNDLEHMCALDSLAVGNYKDSKHYIFLQRFGDVWERVEQRSIKR
Ga0181405_10008702	F001942	N/A	MAKTSEDHQSNSRLGALGESLVQTFLLEYADFCYPTQDKHPADLLFEANNAKYTVQVKTRRKSKEGKFTFAVEKQRNMSEIYKNYHCDILAFVFFSQEYKRIIFKPNTTPQNYFTFSEKVITPTLEIDSLQETLDTLSQVPVLNPLK
Ga0181405_10008704	F063662	AGGAG	MEVIFNIVGGGEICLPKREIRGYYKDFLTGETKVQIGEGEYEVRESLTEIKYLMETRDESISGV
Ga0181405_10008708	F093807	N/A	MKQRKTMTQFSDIVELHRLKLNKEKDEWYIHVNNGAGYTEVKQGNTLTTTYHADGRKEVVIDAN