Basic Information | |
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Taxon OID | 3300017749 Open in IMG/M |
Scaffold ID | Ga0181392_1032001 Open in IMG/M |
Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1651 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F019754 | Metagenome | 228 | Y |
F020110 | Metagenome | 226 | N |
F022313 | Metagenome | 215 | Y |
F023484 | Metagenome | 210 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181392_10320013 | F022313 | N/A | MTYHYQPQQEYELTKLERILKELEAIIEREKKRHMMDEHLTHSMRDLLEYEIIPMLEAEVYYDPTPQY |
Ga0181392_10320014 | F023484 | N/A | MNVNTESGGFLIASLGRYTSKTEKIIFFRTRAGSLVSSYYVSTFNAIKEGDGLMLSNSCDPDQVIDADQVAKCKTFIRNHS |
Ga0181392_10320015 | F020110 | N/A | MSTQQEVQARLSYTRAMLERGIRTASVATMVSAKFCVSRSTAYNDITASQAEIDLSEDGPSLEESSEPINTNSVLAMLQHRLEVSVAIGDDKAVCSLIKAMNQAKQWNGYNTQSVSPFA |
Ga0181392_10320016 | F019754 | N/A | MNNSDDFMLPSELEPAWPPSDDDIDAMELDAYDRQKLQDLIDHELFMDEMAGVPTAAERNPNLK |
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