NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181392_1026300

Scaffold Ga0181392_1026300


Overview

Basic Information
Taxon OID3300017749 Open in IMG/M
Scaffold IDGa0181392_1026300 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1841
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070663Metagenome123Y
F101486Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0181392_10263001F101486N/AMSYPSYLEYFSSSIENVSTATFKIAPTSNNAVSSHQQIQFLLPQNSLVDFRKLRMQFQVTSAGAFTRLPAHASAFFNRISVEVGGQTISSFENANVLDEILRNNLQIEVDPVNEHSTIQRKNDPFSATAIAAAETYPIDDNKAFFSIDLGTLSRSIQPSIVALMMLPQVTVTLHLAENAVCASPSNIDTLAHFIAAGTQGTYSIANANLIAECYDVQDGSLMAMYQQTMQDQGYLELTYENWTSFSDVFNQVTRFSSSAQSLNKIVATFRRGSA
Ga0181392_10263002F070663N/ALTCRNGQVNKISLIQFNAHRNWYTVNKFNSKFFVKYVKGGVEFSVTGNLTHKDYGSIGDVATEFATQLKSLLDTAQGGTGFGAVANQVPVAGQRTGQTGKRSFSCDMTSAATLTLSSIRVQFPQFRDSSDETDFNDSYVLLGGKRITDSTDTTTSSIKVTIAGNKVSFQAPFPMVLQTQPYMYLSLNVSNDNLQTANLGNVNAAIDEHVTSSCFLGKIPIQNEYCAIQLDESTPYFMTTSQRTVTELLFQCLDGHGRAFPFIDDVGDGDNIETQGNLFSDMIIRHEVLDIGSDGNVLDAPFKTYNYQLNSVGTPQLVGGGGF
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