Scaffold Ga0181393_1016338

Overview

Basic Information

• Taxon OID: 3300017748
• Scaffold ID: Ga0181393_1016338
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2197
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022314	Metagenome	215	Y
F057683	Metagenome	136	N
F092859	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181393_10163383	F057683	AGGAG	MSIKDNLDRETYGDLMYRLGQMDAILQDLQGTINRFHEESRRIREGQPPQIVRALDEVLQRNAQTQNQQHPMHPHTDDDDVIGRTPAAQEVEE
Ga0181393_10163384	F092859	AGGAG	MSDNNTDTITISENSEDKDTTVTIPLQFTAKLGVPQEMIDEGNRALNRFKWTMFALVGGYIALNVYVAYLQVSS
Ga0181393_10163386	F022314	AGG	MVKTREILKLGDIVRLVRHEPPEDPFHSFSTEQIDRMGVGLVVDIEELNSYKDVPEKKWVEYTILWSGRGEQLKHLGFDLIKITGAEI