Scaffold Ga0181393_1000263

Overview

Basic Information

• Taxon OID: 3300017748
• Scaffold ID: Ga0181393_1000263
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19601
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (43.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010211	Metagenome / Metatranscriptome	307	N
F060872	Metagenome / Metatranscriptome	132	N
F074825	Metagenome	119	Y
F097256	Metagenome	104	N
F101207	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181393_10002631	F101207	N/A	MAINSNFSIYEPEAFVEVALANQYPNRPMVSKAVTNVAGASIEGLVAARNKTVSITRAVKPTGAPSSYSGSYSLGTPDANEEQLVINKHYYSGFSIDKADQKFALPDLVQQHFVPRLHQL
Ga0181393_100026335	F097256	GAG	MTLEEIKDAVKKSPYSMVDFSKHVAIYMGMEWSNKFKERIYQLLSPKGHGKPSEDELSAMVFWCDVQNDPHWYAHRYYRSKDLPKKYLLLRDWLTGRRSYNRLQAKKMLDYISRLL
Ga0181393_100026337	F074825	AGGAGG	MEIIAVLSLSITTGYIGFIFGSSMKQIEASEKSTTEAFKEGYIKGYIDGHANATKKEKPYYEDFPKMGIN
Ga0181393_10002636	F060872	AGTAG	MREPDKVWDIPLWETNHSKQRLLQEEAMDFLSYKLGYEMSEETDDPTRKAYKHFDGYNHYPDGNLTALDYDSGHPVWLCADFNRSPHCWALLQVKRARNGLKQYVIFDEIFSKEALTTEQALKAVELLKKWGVSKVLLAGDNTSNQKSGNYGRVGKNDWDYVREVFDEHDISYKNELDIQNPKRKVRVDKVNNVIYAGTNGERRLLVNTRCEHVIKDYMYSIVNDKGLKIDNGDRGHMSDATDYAIWRNERGSNAPMYVLR
Ga0181393_10002639	F010211	GAG	MSQKQKKNNWSDLLVNIVGHEPPPDSLDLRNSFIENCLADQDGFKVTQAHIHHTMQKGIYDWEQQALSMNARLNGLIRAPYNTGKSQQVPIGLSAYMTTRKHELETLIVSADGGISTKRILSLRALFQSDMYRYWCREHNFNPVEFDRTDTGSTQRIIVKSRNRTGNPTYEAYAVLTQTTGQRAGVLILDDVCNDEDRISTARRETVWNKVSNTWIKRVHDKGIVLSVCTPYHPNDANSRLMKSGIFNVLQISVKEDKTGYMVEEWNNFGE