Scaffold Ga0181352_1034414

Overview

Basic Information

• Taxon OID: 3300017747
• Scaffold ID: Ga0181352_1034414
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1519
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010672	Metagenome	300	Y
F021488	Metagenome	218	Y
F023041	Metagenome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181352_10344141	F023041	N/A	MNNPPYDTGKVKIGLTYTPPPPESTPESDWIQGILLGDRRGMDDLTLTTIQSIGLIAFIVIVMLLTGGTSNA
Ga0181352_10344142	F010672	AGGAGG	MPDIQTAFKTALSRTLQEWDDDGETVSPPLTINTTINNSVPQPSQGIPMKKTFNITNNISRVTFDYIKNNPGSTRKEIIEALEHQGFAGGSTSSLIAQMRRNKMIHETNNLYYADIDEYRPIKSLKALKKMEAPIAPPKRKYEKKAVTGIGALLREKLEKVPEPSQDALDAAAYAMGGHTPKRMVSLVRVKSPEDILKDMTVYQAHALYHHLKQMFGG
Ga0181352_10344145	F021488	AGGA	MSDASFNQEDFDRIFGVPKDEIRENYPMIRNAVLEEVAQEFDAMRIAFGDTADSFATYVRDMKT