Scaffold Ga0181352_1013561

Overview

Basic Information

• Taxon OID: 3300017747
• Scaffold ID: Ga0181352_1013561
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2603
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003601	Metagenome / Metatranscriptome	477	Y
F077223	Metagenome / Metatranscriptome	117	N
F087064	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181352_10135612	F087064	N/A	MTNRRQYDYTIGDRVAERPKAHGLLTKYADVRERLQQYRSQRYGTVVGINIKPNKSGAKLKFLLIRWDHLKTPTEHAQMRICPADQLQRLQSEGYGFEVE
Ga0181352_10135614	F077223	N/A	MQFFAAFKSFIPEFHAYADEDKRYNIGATWTDNEGLRDYHNLEMRYVRNSEKLALQGEPQPDGSWKYVEPNGNVHVISAERARHFMETTQAHATMMCGMLERLKEAGLYDKLIDTEATPA
Ga0181352_10135617	F003601	GGA	MDHTDEQLLAMALANLGDYIHDNSPQYILIEDDPRNEDDYDTWDVGMEPIPGDQTWKSNAIDVESSEVND