Scaffold Ga0181352

Basic Information
Taxon OID	3300017747 Open in IMG/M
Scaffold ID	Ga0181352_1003971 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017747 Open in IMG/M

Scaffold ID

Ga0181352_1003971 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5178
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5178

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (20.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.2382	Long. (^o)	-86.2805	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.2382

Long. (^o)

-86.2805

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003038	Metagenome / Metatranscriptome	511	Y
F044374	Metagenome / Metatranscriptome	154	Y
F065559	Metagenome / Metatranscriptome	127	Y
F067648	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181352_10039711	F044374	N/A	MSRKEKEKEFFAHHMDKFRKAQVTDPFFAIKTAFFQKGKYGRQVQLFEGELKRGEDIYIEFIDIMRDALGKETGIEHAFEDRPLFKYKHNPYFAEEYDVKEGTSSNGDNYFAYTIPLSELMVIMPDGSEITHNLYEKRKAEAPKEQVSLSVFPDFENEFIPKLKDISLDEEESASDILLRIAADFQKLATKMK
Ga0181352_100397110	F067648	GAG	MTRDELKNLINMFQSSDSENHIVAFHAIENSPLDNNELVLLYKFSGQQFAKWKQEIPMTAQRVADVIGDEAIALSSARVLGIITNNKAAKHVIETFLEFFIRDLTSMLGSIGYPMDKVDINVKIRDDGQSTES
Ga0181352_10039713	F003038	N/A	MALSTTDLGSAGSGLPKTITPGNHVLKINSIELEDFKFIDGAYHLMMHVETQPIEGFEGFMIDKDDESKGRYAGQIGRVKASQYAFADGETKTGIKIQRDRSILIFLRTLAHTMELDSWFLEQDGQHDTIEDFVKAFNKTADFRGKFLEFCVAGKEYEGKSGYTNYDMWLPKAEGKKYAFGAIEEGVVIPYDETKHLKKLEVKEVKSFGDDDVFLKPKTSSDFSLD
Ga0181352_10039717	F065559	N/A	MNEINMMATLVKLADLGVTGIKVQYEGSGDSGAIENVVYTTEKMDEDEEAAFDDINDIYVWNKDVSHLQELDSGLSSDIANFVEEQLLNDIEDWWNNDGGFGAVCILIPSGKYKIYNDIRITQIESYFHEGSLIQKTL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181352_1003971

Overview

Ecosystem & Geography

Associated Families

Sequences