Scaffold Ga0181352_1000575

Overview

Basic Information

• Taxon OID: 3300017747
• Scaffold ID: Ga0181352_1000575
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15417
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001827	Metagenome / Metatranscriptome	629	Y
F025681	Metagenome / Metatranscriptome	200	Y
F042220	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181352_10005752	F042220	AGGAG	MTDFMQKQIEASERLYNMMMADHKQRFEKIAEVYALSESLQKKINERDEEIRKLKLKLLTYESLERM
Ga0181352_100057527	F025681	AGG	MYQEYKAQGMELVDAYGQAKDVVADLSGHLGNFFKAHEQLEKHVHEEELKVKKARDPELSVNQEAFNRIMAQKEMQRLETELRETLVYSAPRELGAIWTEFEAMRDRVKAERAEVQRQELLKQQAASWRRAKIRKQIQSQLTSIFAVLFVTGWFLWLMILLRTSVTYRGLYSSPSSFCVL
Ga0181352_10005758	F001827	GGA	MDNHDIKVMTDGAAVVVGVSGFMSWFPPIVALVGGLLTIIWLSLRIYETDTVKGVIKRFRGE