Scaffold Ga0181352

Basic Information
Taxon OID	3300017747 Open in IMG/M
Scaffold ID	Ga0181352_1000440 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017747 Open in IMG/M

Scaffold ID

Ga0181352_1000440 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17804
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (46.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

17804

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (46.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.2382	Long. (^o)	-86.2805	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.2382

Long. (^o)

-86.2805

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014726	Metagenome / Metatranscriptome	260	Y
F016141	Metagenome / Metatranscriptome	249	Y
F030057	Metagenome / Metatranscriptome	186	Y
F035672	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181352_100044014	F016141	AGGA	MSPEILDSLQKRFGSADFSRYQVLRGQKYDFCRLQNGATTASSVSFFSNPIGAADPAAPTVFKTLEQTNLVKNASFGQEYFALTQIRTYANFVAQARQGTAVGSNFVYRGYTALLSSAMEQLQTLINTGVLEIKFAQKLYYQIARPFVQCPPGFGIDIQSLASSRTGNAAETQLTDTNWTVRPDHRATAVYNIDPIQIIEPEIQIQAALTFPGGNAPSFLDSALTTGNTAFTPALEVGLIFDGYVIRPSQ
Ga0181352_100044015	F014726	N/A	MGFQSESIISAASQKFGVIDYSRWQAIRWQWYSYVTYPTAGASELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQIRNNDVDGFTLANGVANTLDTFALASDFLNGFVQAGVLEFSVGARPFATIPKPFMYAPPPGSPNDYDNSYANQITAVPTAGTSQVVGLPWVTQTKMRSNVYFVDPNILIEAEQQFNVKLSYPSGLLPVIATGVANDSTNPLKVGVILDGLLLRPV
Ga0181352_100044026	F030057	N/A	MAVAYNLKKTLGGSLWKWIDGEEKVFTVVGPIRAGKSVTNPRSGIAKAPDVMTVLDAADANEKDILVGAVLRSSLTENYPDDSYVGLTFACTQGAVKPGTRYKTMTVAEVEIEAPTTKKAKK
Ga0181352_10004409	F035672	GGA	MHNLHDTLRDLGIGVGGPAGGLFIANIVPDPIMANLSVTLGSLAALTVIIKNVIDIWKNNQK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181352_1000440

Overview

Ecosystem & Geography

Associated Families

Sequences