Scaffold Ga0181389_1122954

Overview

Basic Information

• Taxon OID: 3300017746
• Scaffold ID: Ga0181389_1122954
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 703
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011410	Metagenome	291	Y
F015532	Metagenome / Metatranscriptome	254	Y
F083388	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181389_11229541	F015532	GAGG	MTLIKENKTVRTEIPNRMMSATFALPIDGRRVVGILDYTANDTGLTPMAFWIK
Ga0181389_11229542	F011410	GAG	MKDFKIKLVWSTSDFLAWVVFAIGIGLCIVNFVTIYNMYSVIETMWHEIVQVKETNISLFQFIEEHKNDFD
Ga0181389_11229543	F083388	GGAGG	MAGMLIQKRIANLEAVIERCSPGFKAVWERKLEQLLARRVEMAYERFQDQARMVH