NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181389_1016795

Scaffold Ga0181389_1016795


Overview

Basic Information
Taxon OID3300017746 Open in IMG/M
Scaffold IDGa0181389_1016795 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2335
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057352Metagenome136Y
F065945Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0181389_10167951F057352N/ACKMMKLWVMHGTYENEMFTSIHLTEKGCALAAIADIMDFLDVSDEESALSVMRDMYAYTEDEKAIQGAEKPFEWDHDKMKEMSSKELWKIFADWTETCWERMSDRSYYIDATPQMVQA
Ga0181389_101679510F065945AGGAGMGYRSEVILAVGPEVMPQFMVTMAKSPKARELCWADHDEM

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