Scaffold Ga0181389_1002651

Overview

Basic Information

• Taxon OID: 3300017746
• Scaffold ID: Ga0181389_1002651
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6699
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032266	Metagenome	180	Y
F046979	Metagenome / Metatranscriptome	150	Y
F077948	Metagenome / Metatranscriptome	117	Y
F093726	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181389_100265113	F046979	N/A	MKLDREKNISRYNHCFDLKLSFSCQECGAVANAYPPKDDGIKEGGKYYVKR
Ga0181389_100265115	F032266	N/A	MELKKDTVKAVMFIEDAINLSHDELKKKFKEAVDNNTINHFEIKTRGEK
Ga0181389_10026515	F077948	GAGG	MKDFAHKLHRPKQPKPWNDVAREMTENLIFVALMVFIIIVIAGTFI
Ga0181389_10026518	F093726	GGAG	MTYEIAEYKYANHMREHYGLIGDIKYPDKDQSKQDPEGNWLLISNQGQKMAKVLTTGFII