Scaffold Ga0181427_1039700

Overview

Basic Information

• Taxon OID: 3300017745
• Scaffold ID: Ga0181427_1039700
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1169
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006892	Metagenome	362	Y
F015659	Metagenome	253	Y
F020445	Metagenome / Metatranscriptome	224	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181427_10397002	F020445	AGGA	MSDYDNSAALWKRQARDTDVDGKKYPAYQGNLTVNGKKMNLAAWLNTEKTKEGQPDISLKISEIVAKEDAPF
Ga0181427_10397003	F015659	GGA	MKNGLAEAIKKFRESIDDKDYANLGAKGKYLTVPYRIKFVRDFFGERMSIQTNSTELANGSHKFRANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKETPKPIVKLVPKNKRISTEQMANEWIELLKKTAQHSVSVGKFEQNLNPLRKEYINELQTIYTDLIQQQRIDTAYISLQKQITNRKQ
Ga0181427_10397004	F006892	N/A	SDMGIIKPLRDRVRDLEVINEAHQKKNGQLRVEIQEKNKKIDELIERINNPLKKMRGHGELXKMD