Scaffold Ga0181427_1005868

Overview

Basic Information

• Taxon OID: 3300017745
• Scaffold ID: Ga0181427_1005868
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3076
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029471	Metagenome / Metatranscriptome	188	N
F048362	Metagenome / Metatranscriptome	148	N
F073589	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181427_10058682	F048362	AGGAG	MLIKLQNWLMNVAAKWLWIAIMLPIRIILGLIFAVSKHMPTKVELPYKVVKNEQRQEKWY
Ga0181427_10058683	F029471	AGGAG	MLSSELNQQDYSDSRLDDMQDVLDCVDMKAGIKTFFDTVISPFADHQDWTMLAEWNANSIIGVFQRHHEQCIKSLDKTRDLMKNAMREDVGNEITKLNVDKLIFRRDAQEVNIKRAEAILNEFHICYEVTFGKKFMPQSKTPAKDVTKQMKEYNVARLKEALGQK
Ga0181427_10058686	F073589	AGGAG	MNYKVNIWQDDTLKREIVYSAENDIQAIQMASAATPDGCRSTYEQVMEDKCPTEKEPMVQKEEDLLQKAS