Scaffold Ga0181397_1016376

Overview

Basic Information

• Taxon OID: 3300017744
• Scaffold ID: Ga0181397_1016376
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2218
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002077	Metagenome / Metatranscriptome	596	N
F016474	Metagenome	247	N
F016595	Metagenome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181397_10163761	F016474	N/A	RETKTYLLKHEYDQDKKEMISKPCQINMRWKIYDTFACLEIIGVEHQAETIKHQLICHKDQTIKILNSLNEQIEHEDDLEPCKKDRFYFNENVGIQWGLHGQLDLEDLINEKEGS
Ga0181397_10163763	F016595	N/A	MAYYFKCMECNYKETFNDTFEIPIVALEGSLADNETVICDGCISKKTRLKGNHIIINRSNNNANI
Ga0181397_10163766	F002077	N/A	MLKATVVTNLLPQKTTQREISPQQEEFLTNLFENGGNVTDAALSAGYSKGSVTWLKTSLADEIIHRTKNILSINAFKAATRLVSTIDNPVPERGDDLRFRAAESLLNRVGLGKQETTNVNVQAVHGIVLLPPK