Scaffold Ga0181397_1000350

Overview

Basic Information

• Taxon OID: 3300017744
• Scaffold ID: Ga0181397_1000350
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17574
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041140	Metagenome / Metatranscriptome	160	Y
F064790	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181397_10003502	F041140	AGGAG	MKWINTKVEFTWDSKKQKYTETDVQGYNYTGEVAQCGGGGESFGAGELVSISGSLEGIPHVSMSVGDKVLSADITGLPDTDVASEYLLWTYTGSFASFTSSQVSLATSSVESITTHSRHPNDDGMWKIVCENGRTDDILVTEAHPFLVYSGSSTDGEQGAWFFEYAEDITSNMKLLSSSLEPINITSVTNVTSSASESFFRFDIEPFDVYFVEGVLVHN
Ga0181397_100035027	F064790	AGAAG	VINKIVSCGCSWMYGSGCHKNLDHRVSALFAKKYNAEDINMAKDGGNNDRSVRKIVDWAIQNKDKLDETIFLLGLSNPERYDLWDEVRGCYAGGCYEENRPDDLSISNEGWRNGWTLDMGNDHHMMISGRTERLMGKYHWNTLRDYDRTFRNVIYIMGVLDSLNCKYLIFDCLGWTRSNLPSREDYVGEDMSWEYEDYIKLLRYVIDNPLYQEILTHKNFYSKQCWMEFCLPRGKGMFAAEAEQNPDEQTPYPADGNLDWGHPSSKSNKLWFEVLVNYVEENKLW