Scaffold Ga0181402_1008625

Overview

Basic Information

• Taxon OID: 3300017743
• Scaffold ID: Ga0181402_1008625
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3123
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F031261	Metagenome	183	Y
F056531	Metagenome	137	Y
F068823	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181402_100862514	F056531	GGAGG	MKTISRFTEHYLDKTKVRKGDFDWDLYNMKEELTDEQEALRQLNGLIESIATGNNTYTLDTFKADVKEVLEEVSDDK
Ga0181402_10086255	F031261	GGAGG	MRTSRYVLTVDKNSDQILDQLNRLQEVRNSVSLLNRHSDTKHYVKCQGRWGRKNPNYNHRTIPFCPLADAVKWDVYIYEK
Ga0181402_10086257	F003051	GGAGG	MKTKILKSKVTIDMSISEYDTLFKYIGKLDSMLNTLHETNDLWLSDVHNLSSLKWELIEMLDAEWNADTYRYVKRGSK
Ga0181402_10086258	F068823	GGAGG	MGTYNEYYFEKEDVEATLDKIGLLTRLLGIVYKEQGLDTIKYLVERNSNRKYLWLDDSMMEDIINNMEDKQYEN