Scaffold Ga0181402_1002455

Overview

Basic Information

• Taxon OID: 3300017743
• Scaffold ID: Ga0181402_1002455
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6370
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002586	Metagenome	546	N
F006528	Metagenome / Metatranscriptome	371	Y
F026711	Metagenome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181402_100245513	F002586	AGGA	MLKVKLEANEVELALNIANKRYIGNLRMGKTFSYGYTKGIKSQLTDGILGALGEVAYAKATNSFYNGSYSDDNQFYSDSDFQNNIEIRTQEKKSYNFLLIRPGEKKGKYILIIKDNNEDFNFSIMGSFIYNDDLPPEKLSNFGYQDRPAAYKIELKELKNIDNYDR
Ga0181402_10024555	F026711	N/A	MNKRISQYDAEMVADWFNGSNLVHSSIADNKQLKELFEQSEKLRQKAHKIIVDDATWKFEFKRGNQRKLKVKYNYDKGEK
Ga0181402_10024559	F006528	N/A	MKEKDKHSTKLNIEKLVIQTFKNIIEGSRSINGVTWNKIKNLKRKDQIICLKQLSQ