Scaffold Ga0181402

Basic Information
Taxon OID	3300017743 Open in IMG/M
Scaffold ID	Ga0181402_1000033 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	43823
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	61 (91.04%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

43823

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

61 (91.04%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030742	Metagenome / Metatranscriptome	184	N
F059018	Metagenome / Metatranscriptome	134	N
F064618	Metagenome	128	N
F070161	Metagenome / Metatranscriptome	123	N
F076038	Metagenome / Metatranscriptome	118	N
F105230	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181402_100003319	F030742	GAGG	MKNLLIAVSVMAAGAATAQEAPMSVGNTYVELGTNFEEETTLTVGTGVGSGALSAYGELSGSTDGNFQARAYTDVEFGKFVVTPGLNYGWGEDGGDLVGFGDNNEWGDVTGDLEVALKPGIIGGEYVFANTGVGVDGWSLEWDGGEVGAGYKLDLAENVYLDGRVSWGYDDQFESTERRITAGFGLKF
Ga0181402_10000332	F076038	AGGAG	MAKTKNITAEGTVEYARIFSDNFDDNMEYHEATRGQYNMNFYPDNIEEFINQGFPEAKGQWKTIKEGNPSYGSGKYVKLKRPVYNPNLPNEDGSKGVEMGPPKVLNRTTDPNGASEWSFTEDGALGNGTRVKALVKVYEGRAVIDTLEKVAILEHEPYEVGVSGDNF
Ga0181402_100003320	F064618	GGAG	MITTRILAALFVVLFSLTACTGIGLATKGATLLADATGNAQIEQATEILTEVAGDAVPLAGIINITNTNWVMLGLLILGWILPSPGEILRTIFNPIGWLIKTLLTKK
Ga0181402_100003337	F105230	GAGG	MANINHKRGDTFQLDFTLEANDVAVDITNFNIRAQARNAAGTLILYWDATNGSMVKTNATGGLFHFKSEATYSPTPADGRLATESWPLGVMNVDVEFTDTSATPDSVSSSETFTITVLEDVTRDEE
Ga0181402_100003343	F059018	GAG	MAVPKLKVSPSLKAKLAEIDEMLEDAVERKMTDVARTVVLASPVDTGAFVNSWSFKDNLGGGRSKSSDNRPRGRDKGAERGKGLNSLVNDIKKTVEVGSPGGSVREGIALQAGNYYFINRAPHAIEVERKKQIVDKIIRQHGR
Ga0181402_100003344	F070161	GAGG	MSFNASDLLKLVQDFGETLTLRKVTTGGTYNASTGTVSGSATTDYSFTGYFYNLAEGISDLNQTRKGRRACVIPAKGLSATPDDEDQILGNGDTVNITTVRTIFSGGQAVCYLCETFE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181402_1000033

Overview

Ecosystem & Geography

Associated Families

Sequences