NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181399_1159799

Scaffold Ga0181399_1159799


Overview

Basic Information
Taxon OID3300017742 Open in IMG/M
Scaffold IDGa0181399_1159799 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)539
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001740Metagenome / Metatranscriptome643Y
F004850Metagenome / Metatranscriptome421Y
F023317Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0181399_11597991F001740N/AITMYNSNNPSNWSWSKAFDEMAKTVNQAELTQQCINHVLNYPGEANGVFMTLSKSQQDDVYELLDQVL
Ga0181399_11597992F023317N/AMNNLNTTIDKVAMSEFDMHYYELGDNEKQWCHDEMMNNPKWLAPFWKQEGYQSETDKLCEELGILNYKNNN
Ga0181399_11597993F004850N/AMIDNYEFEIYYGDIEEPLYLTNDKNYICDEMRDFM

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