NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181399_1026986

Scaffold Ga0181399_1026986


Overview

Basic Information
Taxon OID3300017742 Open in IMG/M
Scaffold IDGa0181399_1026986 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1576
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026741Metagenome197Y
F049595Metagenome / Metatranscriptome146N
F099995Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0181399_10269861F026741N/AVREIKPMTNDKPNLTNTAFADILAEPFADLLKPKKFYPTIMVEYTPSREEWMEIAEAIWVGALEGGSNHWIAYIHTGGHDLKTGSDVVDSNFEIVIHNEYESSWDDDDETETHRVKAFDVIVDGINLLDPERQRLALTVDELGQLDANDYDYIIQLGVFGKEVYC
Ga0181399_10269863F049595GGGGGMSHVSDYRFENHGSIFLCQPLTGAAKDNLDQACEGTDDFHIRWGDALVIDHRFANDIAQQLIEEGWIIE
Ga0181399_10269865F099995GGAMAFLYKGTDDWSGIKWCVRTVYWHDNYGLNDMLVYGGDYNPYEKPENPLIEFYDMDSLVANTETGDEGHDARIKERGQFVSRYYLDTLNGTDRGTHASAPQFEDNWTDGLNLDGGVERWSISGEFYTKAMQAVNADFKEWK

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