Scaffold Ga0181399_1004544

Overview

Basic Information

• Taxon OID: 3300017742
• Scaffold ID: Ga0181399_1004544
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4362
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F061778	Metagenome	131	N
F080492	Metagenome	115	N
F095310	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181399_10045441	F095310	GAGG	MKMFLIKLLTTLAVFLTMYVSIIIVNDDTVENSDEIITLNRKVQSLEETLQAVKEQQNYLQIMQKGLRDALDNRTVEVDRLVEQAVDDKFNEQSATGGFGVLTGEILPVEEVVEEAIEEVVEXAMMI
Ga0181399_100454413	F080492	GAGG	MKLHYTEYKKNYKAYILECIENEDGLIGKNLSDDEKINYLFERFYSEYGFLVERQGKHSAMTDWLGGLAIHIPYTYADIIELAIDMGSIEDNPSEALEDRVIENYFSFMANIILSFEIKEVA
Ga0181399_10045445	F061778	AGGAGG	MMNKYNVAVHYEEGFSVEVTAPNVEDARKLAQELVDTYCGVSESFDNVGQDEGKYKKTYHRDCWIVGEN
Ga0181399_10045447	F003976	GGAGG	MSRTYNDYYFEKLDILATLEKLDMSVRFLDKWVDEPEGLENARYILEKNANRKFNWFDTNMVRELLEEEVRXR