Scaffold Ga0181399_1000607

Overview

Basic Information

• Taxon OID: 3300017742
• Scaffold ID: Ga0181399_1000607
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13068
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071009	Metagenome	122	N
F073285	Metagenome	120	Y
F086945	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181399_100060714	F073285	N/A	MKIKYLLIGLNRSHDEIVKIFTHDISIDVINNYLKSYLSDMEYLQELTDKFDTFQKTLKEEGHAHEIFDIIKWYMMEYKDTYVTIEETKLIES
Ga0181399_10006074	F086945	N/A	MKFDINEEITDCSEWVGIDHKAISDGWYHFWGNTQITSFEKDIKGKYVRDEDGKLIAHRTNKPRKLPKTWYNKNKDGS
Ga0181399_10006076	F071009	N/A	MTTDPENLPSLDDASLDTLIQHYLSLKQRLTDNLYVRERLVELQDEQLKRQIEALGNYEPIGDDMKNQLNNQ