Scaffold Ga0181421_1078065

Overview

Basic Information

• Taxon OID: 3300017741
• Scaffold ID: Ga0181421_1078065
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 867
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Gammaproteobacteria virus GOV_bin_2604 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005019	Metagenome	415	Y
F008795	Metagenome	328	N
F040332	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181421_10780651	F040332	N/A	LETQSYHKSQENLEKQSLKQKMYRTPTSMDTNEDSMIYAAKILKGKVNRSSNSRVQITLSTDVAMEYLKNNPHLIDQFDKPFMYRPNLPDKLEFINYLKSQITIKELVSNTDIAKTKIEHWFRKDNCFSYPTIDDWNKIKPLLKDIKFDEELTYEVEKDWKEIE
Ga0181421_10780652	F005019	GAG	MYGDVRQCIKCDMNADIVEKGKNYCANCWFKYFSGESIEEYEKRVKQLDQARNDKNKTRT
Ga0181421_10780653	F008795	N/A	MIKIKLEPNEVELALNIATKRYIGNLKMGKTFSYGYTKGIKSQLTDGILGALGEVAYAKATNSFYNGSYS