Scaffold Ga0181433_1049785

Overview

Basic Information

• Taxon OID: 3300017739
• Scaffold ID: Ga0181433_1049785
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1069
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002318	Metagenome / Metatranscriptome	571	Y
F006528	Metagenome / Metatranscriptome	371	Y
F056530	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181433_10497851	F056530	N/A	MLKDFKIEKNVPIIKDARKGQKYTNPLYLIAQEMEIGDSIRFPLPEYVHVNYDKRDEYSNEEWEDLLNKKCDFDYNYNSAKNLRRYLIELYGKGAVAERSLKNIPEEKTNKDGVRVWRIK
Ga0181433_10497852	F006528	AGGA	MKDKEKHLIKDIEKLAIETFKNIIEGSRSINGVTWNRIKNYKRKDQIICSKILK
Ga0181433_10497854	F002318	AGGGGG	MKAKDYKSITNILESQNKGKKFYDFMDIEDVKYRIKEDIVPLPKQYFNNIVKLIKGE