NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181433_1000096

Scaffold Ga0181433_1000096


Overview

Basic Information
Taxon OID3300017739 Open in IMG/M
Scaffold IDGa0181433_1000096 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27545
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045689Metagenome152Y
F078930Metagenome116Y
F090987Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0181433_100009611F090987N/AMIMRKRRNIPTVPVDFYEDIENKDKYQRILYGSILDGVEQSLKSNKNKFIMARINDGRSLKDIEILEDSFKTNLETVLDYYEQNEEYELCSKTLNLINQI
Ga0181433_10000965F045689N/AMDKKERFQLAKKNVLKRFPKAVTLADSRGKFYVAQDGIDICNKEMHKAVKRGAALEELDLIKEIRHSDTVFQAWLNAESMLVANRIIESNTARFSDEKVASKNLE
Ga0181433_10000969F078930N/AMADEKLKEELKKILKINGTKISKERPVKGLLKKEAFIRFIENYKYANDRALILKSEHQIDFVNFEEPFVQAIEALLQLHFNKNQKQIVEWWLYEKWNQLDGSVLQLNNTETNEELPSDTPEELWDLVQTLK

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