NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181428_1047835

Scaffold Ga0181428_1047835


Overview

Basic Information
Taxon OID3300017738 Open in IMG/M
Scaffold IDGa0181428_1047835 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)997
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036656Metagenome / Metatranscriptome169Y
F085551Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0181428_10478351F036656N/ALCSNQSIPLEFLKGACIFLSDEDEGRYIKDVIIDLSKHSLILIDENNEGMYWESLRNASIQFRGGR
Ga0181428_10478354F085551GGAGGMSYSIRTRLHHWIEKCPCTNFLVKNKKDQEQVDGVWYDVVVVECLVKAEEQP

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