NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181428_1042292

Scaffold Ga0181428_1042292


Overview

Basic Information
Taxon OID3300017738 Open in IMG/M
Scaffold IDGa0181428_1042292 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1060
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011410Metagenome291Y
F015532Metagenome / Metatranscriptome254Y
F023621Metagenome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0181428_10422921F015532GAGGMTLIKDNKGVRKEIPNRMMSATFALPIDGRRVVGILDYTANDTGLTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGES
Ga0181428_10422922F011410N/ALKSEGGKLLKDLSIKLEWSTSNLLVWTVLGIGIGLCIVNLVTIYNIYSVIETMWLEIQQVKEVNISLYQFIEAHKNDFD
Ga0181428_10422923F023621GGAGGMVAIMDKRINNVLKAMRKAKDYDMKVIWNKKLQELFEIRGRKAFERLEHQARMVH

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