Scaffold Ga0181428_1042292

Overview

Basic Information

• Taxon OID: 3300017738
• Scaffold ID: Ga0181428_1042292
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1060
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011410	Metagenome	291	Y
F015532	Metagenome / Metatranscriptome	254	Y
F023621	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181428_10422921	F015532	GAGG	MTLIKDNKGVRKEIPNRMMSATFALPIDGRRVVGILDYTANDTGLTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGES
Ga0181428_10422922	F011410	N/A	LKSEGGKLLKDLSIKLEWSTSNLLVWTVLGIGIGLCIVNLVTIYNIYSVIETMWLEIQQVKEVNISLYQFIEAHKNDFD
Ga0181428_10422923	F023621	GGAGG	MVAIMDKRINNVLKAMRKAKDYDMKVIWNKKLQELFEIRGRKAFERLEHQARMVH