Scaffold Ga0181428_1004192

Overview

Basic Information

• Taxon OID: 3300017738
• Scaffold ID: Ga0181428_1004192
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3286
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007985	Metagenome / Metatranscriptome	341	Y
F044531	Metagenome / Metatranscriptome	154	Y
F045787	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181428_10041923	F045787	GGAG	MQKVLIKLIELMGVTAGDKVVIEAVDYYLWRLDLPLGKIDGGTYEGKHWGDAVIEDTDAWLTFTVGNLYAKNKFSIGEGIVDINYAEGNQGLAYTGDLEDVVTQRIKDLYNLKADGSEQGMQGDDYISLDIWMDGLGDLELTDEQMDADDDDTVSENYLKQFCRFENYPGVNNGDLRQAVLAS
Ga0181428_10041924	F007985	GGAG	MQQQYKVNNTIFNNLEEATAHVATLNKAVTIEPYTPPSAESKKLNVVRNMLVREMLEWAGSFVHHMSPSTDVSWMYSFEDADGNSDAGDCYYEDCTDVTFGNNLMWADACDDYQSAVDNFDSLLGDYNSYNTEDKLSEMLNNMYHTMSDHSSETDDYIGCVRDSIEKMCANNPNIAHSYHHPSRRTTISFSGNVNSMYKAYMLDRNS
Ga0181428_10041925	F044531	GGAG	MQKVFNNIRVDNNTYITDGDMELTTAQVSKGFWLCGFDRAGSCFEMTKISRARAKECLFDYGTYALKDCDITDFDCATYYWHEEMADGGILRVH