Scaffold Ga0181428_1000157

Overview

Basic Information

• Taxon OID: 3300017738
• Scaffold ID: Ga0181428_1000157
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15574
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (17.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010243	Metagenome / Metatranscriptome	306	Y
F027515	Metagenome / Metatranscriptome	194	Y
F049552	Metagenome / Metatranscriptome	146	Y
F072833	Metagenome	121	Y
F092854	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181428_10001571	F027515	GAG	MTDMTKFYEAMAMITSLPMDLQDRFISEVKEQQRQNVINELNVGTVVKINHKKISPMDQFRITKINRKNVKCQKLN
Ga0181428_10001573	F049552	N/A	MEKKMFEFWKVINMMDFNGRGYQQAGRWLVEDSGLTFSQIKEVRNMATRKVNHLYKQFSDDVQISDDGFDDVLWQTVANGHDSFYDCTAKSLTEMYNENSYTESFAYAFHIVGNIEDEQFAANKFLKRERAMKHIEEMRRYGGGFDQKLLAAFEHADGNNKRKLALGFPELFEHLVD
Ga0181428_100015733	F092854	N/A	MDILKQYIKEYVMYLYNAKIADADVDYQWKHPSDIEHPLQPGYPGDLKGFPYDSSQNKLPPAYTRKRSVAKPHF
Ga0181428_100015736	F072833	AGG	MKKGDIIEFYLFGIPTVGEVYEINRKDKTVSVISDGYNYPGIQTFKTLPRKKKDIPPWYILEK
Ga0181428_100015743	F010243	N/A	MNKLTFILETKTRKGVRGERIHKVVAYSLTEAITMFADIKRLRPDQLIELFSVYEQPNDG