Scaffold Ga0181428_1000029

Overview

Basic Information

• Taxon OID: 3300017738
• Scaffold ID: Ga0181428_1000029
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28178
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (23.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015092	Metagenome / Metatranscriptome	257	Y
F039588	Metagenome	163	Y
F057372	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181428_10000291	F057372	N/A	IMNKHELTDVLIEMVEHAGVELILEELIQCMSQDELFDNIKHLDQHLFENHFLTRED
Ga0181428_100002910	F039588	GGAGG	LKIHPYIQSTRKKGMEDLKFQTAEQVMKHSNTDHNADFYTNMNKGFAMAINGFRISVQWGPGNYVSDTDIRYKASHEAPMQHSIWGCDTAEVMIWGRDGDCLFDLVPFDHDTEEYDKEMFEAQGGHTDQVFGHCTSECVAKMIGCLTNCDDEDPRRSIAQIYNAQG
Ga0181428_10000294	F015092	N/A	MLEKIKSKLLTKLFIEWINDEFDVETLEASKMMIQNRQDTVNTLADQANPPTPIGFRY