Scaffold Ga0181365_1072776

Overview

Basic Information

• Taxon OID: 3300017736
• Scaffold ID: Ga0181365_1072776
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 846
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 108

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014620	Metagenome	261	N
F037730	Metagenome	167	Y
F055728	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181365_10727762	F037730	AGGGGG	MKEFNEAESTNEYLIEQLVIARKENEVLTEHIATLVEDIHKLAEDLKMSSQLLNACVAYM
Ga0181365_10727763	F055728	GGCGG	MRRSYDPHYGSREQLRDSAEHGMKVMRERDALKTENAKLLDEITELKALIAYITGGE
Ga0181365_10727764	F014620	N/A	NRDVVIIAREAQQTSVQAATKVKPKTGKKRARVHAYLLGRPATDEEIETALNMSGNTVRPTRGTLVKDGHVIDSGIRRLTRAGNQAIVWRCV